MICROBIOLOGY AND IMMUNITY
LEARN THROUGH YOUR COURSE AND FORTIFY ALL YOUR WEAKNESS WITH KNOWLEDGE, MEDICAL STUDENTS ARENA CREATES FOR YOU A MAVELOUS LEARNING COURSE
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Topic One: Introduction to Microbiology
Topic Objectives
By end of this topic, the learner should be able to:-
1. Define terms used in microbiology
2.Outline importance of microorganisms
3. Outline
the history of microbiology
4. Outline scientific nomenclature : Genus and a
specific epithet.
5. List
the three domains of microorganism
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Topic One: Definition of terms
Terminologies
• Microbiology: The study of living things too small to be
seen without magnification
•Microorganisms
or microbes-
these microscopic organisms. Commonly
called “germs, viruses, agents…” but not all cause disease and many more are
useful or essential for human life
fields of microbiology
•Microbiology
•Viruses = Virulogy
•Bacteria = Bacteriolgy
•Fungi = Mycology
•Microbiology
•Food Microbiology
•Water Microbiology
•Air Microbiology
•Parasites
= Parasitology
•Immunity
= Immunology
•Soil
Microbiology
•Space
Microbiology
•Industrial
Microbiology
microorganisms are?
•Too small
• Germ-rapidly growing cell
• Has habitat
• Live in population (not alone)
• Communities are either swimming freely or attached
to a
surface (biofilm)
• Interact between communities; may either be -
harmful
(because of waste product)
- beneficial (cooperative
feeding efforts- waste, nutrient)
why study microbiology
•Microbes are related to all life.
•In
all environments
•Many
beneficial aspects
•Related
to life processes (food web, nutrient cycling)
•Only
a minority are pathogenic.
•Most
of our problems are caused by microbes
•
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Topic One: Importance of Microorganism
Microbes in our lives
- •Some are pathogenic (disease-causing)
- Decompose organic waste
- •Produces through photosynthesis (e.g.Purple sulphur
bacteria must fix CO2 to live)
- •Play role in industry (e.g. fermentation
to produce ethanol and acetone)
- •Produce fermented food (vinegar, cheese
& bread)
- •Produce products used in manufacturing (cellulase) and
treatment (insulin)
How Can Microbes Be Classified?
Carolus
Linnaeus (Swedish) developed taxonomic system for naming plants and animals and
grouping similar organisms together
Leeuwenhoek’s
microorganisms grouped into six categories as follows:
Fungi,
Protozoa, Algae, Bacteria, Archaea, Small animals
Naming
and Classifying Microorganisms
•Carolus Linnaeus established the system of scientific nomenclature in
1739.
•Each organism has two names ® Binomial nomenclature: Genus
+ specific
epithet (species)
•Italicized (or underlined),
genus capitalized, “latinized”,
used worldwide.
•May be descriptive or honor a scientist.
Examples
•Staphylococcus aureus (S. aureus)
•Escherichia coli (E. coli)
•Streptococcus pneumoniae
(S. pneumoniae)
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Topic One: History of Microbiology
•The first microbes were observed in 1673.
•In 1665, Robert Hooke (Englishman) reported
that living
things were composed of little
boxes or
cells.
•1673-1723, Antoni van
Leeuwenhoek (Dutch)
described live microorganisms that he observed in teeth
scrapings,
rain water,
and peppercorn infusions.
•Many believed spontaneous generation:
life can
arise from non-living matter
•In 1668, the Italian physician Francesco
Redi performed
an experiment to disprove
spontaneous generation.
•Can you think of an experiment that could
disprove spontaneous
generation?
•Redi
filled six jars with decaying meat
Conditions Results
•3
open jars Maggots appeared
•3
jars covered with No maggots
fine net
•
•From where
did the maggots come?
•What
was the purpose of the sealed jars?
•Spontaneous generation or biogenesis?
•Rudolf
Virchow (German) presented
biogenesis:
living cells can arise only from
preexisting cells.
•So
now there are two hypotheses:
•The
hypothesis that living organisms arise from nonliving matter is called spontaneous
generation.
According to spontaneous
generation, a
“vital force’ Forms life.
•The
Alternative hypothesis, that the living organisms arise
from preexisting life, is
called biogenesis.
•1861: Louis Pasteur demonstrated that
microorganisms are
present in the air.
|
Conditions |
Results |
|
Nutrient broth placed in flask, heated, not sealed |
Microbial growth |
|
Nutrient broth placed in flask, heated, then sealed |
No microbial growth |
•The Golden Age of Microbiology 1857-1914
•Beginning with Pasteur’s work, discoveries included the relationship between microbes and disease, immunity, and antimicrobial drugs
•Pasteur showed that microbes are responsible for fermentation.
•Fermentation is the conversation of sugar to alcohol to make beer and wine.
•Microbial growth is also responsible for spoilage of food.
•Bacteria that use alcohol and produce acetic acid spoil wine by turning it to vinegar (acetic acid).
•Pasteur demonstrated that these spoilage bacteria could be killed by heat that was not hot enough to evaporate the alcohol in wine. This application of a high heat for a short time is called pasteurization.
The Germ Theory of Disease
•1835: Agostino Bassi showed a silkworm disease was caused by a fungus.
•1865: Pasteur believed that another silkworm disease was caused by a protozoan.
•1840s: Ignaz Semmelwise advocated handwashing to prevent transmission of puerperal fever from one OB patient to another.
•1860s: Joseph Lister used a chemical disinfectant to prevent surgical wound infections after looking at Pasteur’s work showing microbes are in the air, can spoil food, and cause animal diseases.
•1876: Robert Koch provided proof that a bacterium causes anthrax and provided the experimental steps, Koch’s postulates, used to prove that a specific microbe causes a specific disease.
•Koch was a physician and Pasteur’s young rival
•A young milkmaid informed the physician Edward Jenner that she could not get smallpox because she had already been sick from cowpox.
•1796: Edward Jenner inoculated a person with cowpox virus. The person was then protected from smallpox.
•Called vaccination from vacca for cow
•The protection is called immunity
•1928: Alexander Fleming discovered the first antibiotic.
•He observed that Penicillium fungus made an antibiotic, penicillin, that killed S. aureus.
•1940s: Penicillin was tested clinically and mass produced.
•Angelina Hesse: Development of Agar Used to Grow Microorganisms.
•Although the microscope was invented in the 1600’s, it took 200 years for scientists to discover its use in isolating and identifying specific microbes for a particular disease.
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Topic Two: Classes of Microorganisms
•Can
be classified as either:
•Non-pathogenic or pathogenic
•Aerobic or anaerobic
•6 classes of microorganisms
•Non-pathogenic
•normal
•do not produce disease
•beneficial
•Pathogenic
•cause infection and disease
•May be non-pathogenic in one body
system, pathogenic in another (E. coli)
•Aerobic
•requires oxygen to live
•Anaerobic
•does not require oxygen to live
•6 classes of microorganisms
•Bacteria
•Protozoa
•Fungi
•Rickettsiae
•Viruses
•Helminths
Importance of microorganisms
•Often
considered the causes of disease
•Certain
bacteria
•produce
antibiotics
•live
in the body without problems
•live
on the roots of certain plants, converting nitrogen into a usable form
•help
break down dead organic matter
•Classified by shape and arrangement
•Treated with antibiotics
Bacteria
•Bacteriology:
scientific study of bacteria
•Medical
bacteriology: is the scientific study of medically relevant bacteria
General
characteristics:
•Typical
prokaryotic cell
•Contain
both DNA and RNA
•Most
grow in artificial media
•Replicate
by binary fission
•Almost
all contain rigid cell wall
•Sensitive
to antimicrobial agent
Structure of the Bacteria
•Cell envelope
proper: Cell wall and cell membrane.
•Cellular
element
enclosed with in the cell envelope:
Mesosomes,
ribosomes, nucleiod and
cytoplasmic granules.
•Cellular
element
external to the cell envelope:
Flagellum,
Pili and Glycocalyx.

Cell wall
• The
bacteria cell wall is rigid
• It is
made up of a peptidoglycan layer
Functions of cell wall
•1.
Provides shape to the bacterium
•2.
Gives rigidity to the organism
•3.
Protects from environment
•4.
Provides staining characteristics to the bacteria

Gram positive bacteria
• Thick
peptidoglycan layer
• Has
no outer membrane
• Peptidoglycan
• Teichoic acid
Gram negative bacteria
•Thin peptidoglycan
layer
• Has
an outer membrane
• Peptidoglycan
• Lipoprotein
• Phospholipid
• Lipopolysaccharide

Functions of bacteria cell structures
Cell membrane
• Also
named as plasma membrane or
cytoplasmic membrane
•It is
composed of protein, lipids and carbohydrate.
(phospholipid layer)
Functions of
cell membrane
•Regulates
the
transport of nutrients and waste products into
and out of the cell.
• Synthesis
of cell wall components

•Flagellum
•It is
a whip-like structure
•It is
the organ of locomotion in bacterial cell

Pili (fimbriae)
•It is
hair like structure
composed of
protein
•It is
the structure for
adherence to
cell surface


Cellular elements
• Mesosomes:
functions in cell division or excretion
•Ribosomes:
protein synthesis
•Cytoplasm:
provision of nutrient
•Nucleiod:
Genetic material
classification o bacteria
Bacteria
can
be classified depending on the following
features.
1. Morphology of bacterial cells
2. Arrangement of bacterial cells
3. Staining of the bacteria
4. Oxygen need
•NB:
Morphology and staining of bacteria are the commonly used
characteristics to classify bacteria.
Morphological classification
•Cocci
(singular coccus):
Round
or oval shaped
•Bacilli
(singular bacillus): Rod
or cylindrical shaped
•Coccobacilli
(singular coccobacillus):
Short
rods
•Spirillum:
spiral shaped, non-flexible
•Spirochete:
spiral shaped, flexible
t coma
shaped


Staining classification
Gram positive bacteria:
•The bacteria
stains
purple or
blue under gram
staining
Gram negative bacteria:
•The bacteria
stains pink or red
under gram
staining
•Examples
of common Gram +ve
bacteria:
•Mycobacterium: M
leprae, M tuberculosis
•Clostridium: C tetani, C perfringens
•Bacillus: B anthracis
•Staphylococcus: S
aureus
•Streptococcus:
S
pyogenes, S
pneumonia
•Examples
of common Gram +ve
bacteria:
•Mycobacterium: M
leprae, M tuberculosis
•Clostridium: C tetani, C perfringens
•Bacillus: B anthracis
•Staphylococcus: S
aureus
•Streptococcus:
S
pyogenes, S
pneumonia
Oxygen need:
On
this
basis bacteria have been divided into 4 groups:
•1.
Obligate anaerobes
•2.
Facultative anaerobes
•3.
Obligatory aerobes
•4.
Microaerophilic
•
Assignment: read and write notes on
each
For
their optimal growth, bacteria requires proper:
•Nutrition
•Oxygen
(or
absence of it)
•pH (neutral)
•Appropriate
temperature
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Topic Two: Classes of Microorganisms: Fungi
Fungi
1. Moulds 2. Yeasts 3. Dimorphic fungi 4. Yeast-like fungi Mycoses
1. Superficial mycoses 2. Cutaneous mycoses 3. Subcutaneous mycoses 4. Systemic mycoses Assignment: read and write short
notes on each
•Rickettsiae
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Topic Two: Classes of Microorganisms: Virus
General characteristics
structure
Their infectivity is affected by:
Replication of viruses
Replication process
Viruses gain access to the host through:
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Topic Two: Classes of Microorganisms: Helminths
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Topic Three: Infection
What is Infection
a. It’s the Invasion by and multiplication of pathogenic microorganisms in a bodily part or tissue, which may produce subsequent tissue injury and progress to overt disease through a variety of cellular or toxic mechanisms.
•b. The pathological state resulting from having been infected.
Definitions
Disease
•Any deviation from a condition of good health and well-being
Infectious Disease
A disease condition caused by the presence or growth of infectious microorganisms or parasites
Pathogenicity and Virulence
– Pathogenicity - The ability of a microbe to cause disease. This term is often used to describe or compare species
Principles of Infection
– Virulence
• The degree of pathogenicity in a microorganism
• This term is often used to describe or compare strains within a species
• Understanding the basic principles of infection is essential for any health care worker in any field of health care.
1. Disease transmission
2. Prevention of disease transmission
RECALL THATMicroorganisms (microbes) are small living organisms that are not visible to the naked eye.
• Pathogens (germs) are microorganisms that cause disease.
• Non-pathogens are microorganisms that do not cause disease; can be beneficial.
COURSE OF INFECTIOUS DISEASESMicroorganisms (microbes) are small living organisms that are not visible to the naked eye.
• Pathogens (germs) are microorganisms that cause disease.
• Non-pathogens are microorganisms that do not cause disease; can be beneficial.
1. One person must be infected with a microorganism
2. The other person must be susceptible to infection with that microorganism
3. The microorganism must be able to leave the body of the infected person and enter the body of the susceptible person.
Classification of Infections
• Primary Infection
Reinfection
• Secondary Infection,
• Focal infection,
• Cross infection,
• Nosocomial infections
• Iatrogenic infection
Acute infection vs. chronic infection
–Acute Infection
•An infection characterized by sudden onset, rapid progression, and often with severe symptoms
–Chronic Infection
•An infection characterized by delayed onset and slow progression
Primary infection vs. secondary infection
–Primary Infection
•An infection that develops in an otherwise healthy individual
–Secondary Infection
•An infection that develops in an individual who is already infected with a different pathogen
Localized infection vs. systemic infection
–Localized Infection
•An infection that is restricted to a specific location or region within the body of the host
–Systemic Infection
•An infection that has spread to several regions or areas in the body of the host
Clinical infection vs. sub- clinical infection
–Clinical Infection
•An infection with obvious observable or detectable symptoms
–Subclinical Infection
•An infection with few or no obvious symptoms
Opportunistic infection
–An infection caused by microorganisms that are commonly found in the host’s environment This term is often used to refer to infections caused by organisms in the normal flora
Source of Infections• Humans from patient or carrier
• A healthy carrier
• Convalescent carrier
• Temporary carrier
• Contact carrier
• Paradoxical carrier
• Animals
• Insects vectors
• Mechanical vector
• Biological vector
• Soil and water
• Food
The
Infectious Process/ stages of infection
•
Redness •
Swelling •
Tenderness •
Warmth •
Drainage •
Red streaks leading away from
wound
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Topic Three: Infection (continuation)
Signs & Symptoms of Infection
• Redness
• Swelling
• Tenderness
• Warmth
• Drainage
• Red streaks leading away from wound
• Local signs
– Inflammation
– Purulent exudate if bacterial infection; serous exudate if viral
– Tissue necrosis
– Lymphadenopathy
– Respiratory effects
• Systemic signs
– Fever, fatigue, headache, nausea
The Normal Flora of Humans
•Normal flora are the microorganisms that live on another living organism (human or animal) or inanimate object without causing disease
Types of Symbiosis
–Mutualism
•A symbiotic relationship in which both species benefit
–Commensalism
•A symbiotic relationship in which one species benefits, and the other species is neither helped nor harmed
Parasitism
•A symbiotic relationship in which one species benefits, and the other species is harmed
•Generally, the species that benefits (the parasite) is much smaller than the species that is harmed (the host)
•Normal flora is present in
–skin
–upper respiratory tract
–oral cavity
–intestine, especially large intestine
–vaginal tract
•Very little normal flora in eyes & stomach
Benefits of the normal flora
–Nutrient production/processing eg Vitamin K production by E. coli
–Competition with pathogenic microbes
–Normal development of the immune system
•Normal flora and opportunistic infections
Steps
to Minimize Risk of Infection
Locate, remove reservoir host
• Block portal exit of microbes from reservoir
• Know mode(s) of transmission of specific infections
• Block portals of entry
• Cleaning
• Sterilization
• Disinfectants
• Antiseptics
SUMMARY
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Unit One: Summary